Articles in the database

189 public articles are in the database

TitleJournalAuthorsAniseed dataPubmed
The single MyoD family gene of Ciona intestinalis encodes two differentially expressed proteins: implications for the evolution of chordate muscle gene regulation.Development. 1997 ;124(9):1711-21Meedel TH, Farmer SC, Lee JJ
Microarray analysis of localization of maternal transcripts in eggs and early embryos of the ascidian, Ciona intestinalis.Dev Biol. 2005 ;284(2):536-50Yamada L, Kobayashi K, Satou Y, Satoh N
Characterization of an ascidian DEAD-box gene, Ci-DEAD1: specific expression in the germ cells and its mRNA localization in the posterior-most blastomeres in early embryos.Dev Genes Evol. 2000 ;210(2):64-72Fujimura M, Takamura K
Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis.Dev Biol. 2006 ;292(2):546-54Miwata K, Chiba T, Horii R, Yamada L, Kubo A, Miyamura D, Satoh N, Satou Y
Interplay of negative and positive signals controls endoderm-specific expression of the ascidian Cititf1 gene promoter.Dev Biol. 2003 ;263(1):12-23Fanelli A, Lania G, Spagnuolo A, Di Lauro R
Dynamic change in the expression of developmental genes in the ascidian central nervous system: revisit to the tripartite model and the origin of the midbrain-hindbrain boundary region.Dev Biol. 2007 ;312(2):631-43Ikuta T, Saiga H
Novel genes involved in Ciona intestinalis embryogenesis: characterization of gene knockdown embryos.Dev Dyn. 2007 ;236(7):1820-31Hamada M, Wada S, Kobayashi K, Satoh N
Microarray analysis of zygotic expression of transcription factor genes and cell signaling molecule genes in early Ciona intestinalis embryos.Dev Growth Differ. 2007 ;49(1):27-37Hamaguchi M, Fujie M, Noda T, Satoh N
Developmental regulation and tissue-specific localization of calmodulin mRNA in the protochordate Ciona intestinalis.Dev Growth Differ. 1999 ;40(4):387-94Di Gregorio A, Villani MG, Locascio A, Ristoratore F, Aniello F, Branno M
Uncoupling heart cell specification and migration in the simple chordate Ciona intestinalis.Development. 2005 ;132(21):4811-8Davidson B, Shi W, Levine M
Transcriptional regulation of ZicL in the Ciona intestinalis embryo.Dev Genes Evol. 2006 ;216(10):597-605Anno C, Satou A, Fujiwara S
Ciona intestinalis cDNA projects: expressed sequence tag analyses and gene expression profiles during embryogenesis.Gene. 2002 ;287(1-2):83-96Satou Y, Takatori N, Fujiwara S, Nishikata T, Saiga H, Kusakabe T, Shin-i T, Kohara Y, Satoh N
Amphioxus and ascidian Dmbx homeobox genes give clues to the vertebrate origins of midbrain development.Development. 2004 ;131(14):3285-94Takahashi T, Holland PW
Oligonucleotide-based microarray analysis of retinoic acid target genes in the protochordate, Ciona intestinalis.Dev Dyn. 2005 ;233(4):1571-8Ishibashi T, Usami T, Fujie M, Azumi K, Satoh N, Fujiwara S
Origin and genetic evolution of the vertebrate skeleton.Zoolog Sci. 2010 ;27(2):119-23Wada H
Identification and developmental expression of Ci-isl, a homologue of vertebrate islet genes, in the ascidian Ciona intestinalis.Mech Dev. 1999 ;78(1-2):199-202Giuliano P, Marino R, Pinto MR, De Santis R
Characterization of a maternal T-Box gene in Ciona intestinalis.Dev Biol. 2000 ;225(1):169-78Erives A, Levine M
A modular cis-regulatory system controls isoform-specific pitx expression in ascidian stomodaeum.Dev Biol. 2004 ;277(2):557-66Christiaen L, Bourrat F, Joly JS
Ephrin-Eph signalling drives the asymmetric division of notochord/neural precursors in Ciona embryos.Development. 2007 ;134(8):1491-7Picco V, Hudson C, Yasuo H
A combinatorial code of maternal GATA, Ets and {beta}-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm.Development. 2007 ;134(22):4023-32Rothbächer U, Bertrand V, Lamy C, Lemaire P
FGF3 in the floor plate directs notochord convergent extension in the Ciona tadpole.Development. 2008 ;136(1):23-8Shi W, Peyrot SM, Munro E, Levine M
Interaction of notochord-derived fibrinogen-like protein with Notch regulates the patterning of the central nervous system of Ciona intestinalis embryos.Dev Biol. 2009 ;328(1):1-12Yamada S, Hotta K, Yamamoto TS, Ueno N, Satoh N, Takahashi H
Temporal expression patterns of 39 Brachyury-downstream genes associated with notochord formation in the Ciona intestinalis embryo.Dev Growth Differ. 2000 ;41(6):657-64Hotta K, Takahashi H, Erives A, Levine M, Satoh N
Ascidian arrestin (Ci-arr), the origin of the visual and nonvisual arrestins of vertebrate.Eur J Biochem. 2002 ;269(21):5112-8Nakagawa M, Orii H, Yoshida N, Jojima E, Horie T, Yoshida R, Haga T, Tsuda M
Morpholino-based gene knockdown screen of novel genes with developmental function in Ciona intestinalis.Development. 2003 ;130(26):6485-95Yamada L, Shoguchi E, Wada S, Kobayashi K, Mochizuki Y, Satou Y, Satoh N
A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.Curr Biol. 2010 ;20(9):792-802Khoueiry P, Rothbächer U, Ohtsuka Y, Daian F, Frangulian E, Roure A, Dubchak I, Lemaire P
Spatio-temporal intersection of Lhx3 and Tbx6 defines the cardiac field through synergistic activation of Mesp.Dev Biol. 2009 ;328(2):552-60Christiaen L, Stolfi A, Davidson B, Levine M
The ascidian homolog of the vertebrate homeobox gene Rx is essential for ocellus development and function.Differentiation. 2006 ;74(5):222-34D'Aniello S, D'Aniello E, Locascio A, Memoli A, Corrado M, Russo MT, Aniello F, Fucci L, Brown ER, Branno M
Suppressor of hairless activates brachyury expression in the Ciona embryo.Dev Biol. 1998 ;203(2):358-68Corbo JC, Fujiwara S, Levine M, Di Gregorio A
Large-scale characterization of genes specific to the larval nervous system in the ascidian Ciona intestinalis.Genesis. 2003 ;36(1):62-71Mochizuki Y, Satou Y, Satoh N
The snail repressor establishes a muscle/notochord boundary in the Ciona embryo.Development. 1998 ;125(13):2511-20Fujiwara S, Corbo JC, Levine M
Identification and developmental expression of Ci-msxb: a novel homologue of Drosophila msh gene in Ciona intestinalis.Mech Dev. 2000 ;88(1):123-6Aniello F, Locascio A, Villani MG, Di Gregorio A, Fucci L, Branno M
Expression of neuropeptide- and hormone-encoding genes in the Ciona intestinalis larval brain.Dev Biol. 2011 ;():Hamada M, Shimozono N, Ohta N, Satou Y, Horie T, Kawada T, Satake H, Sasakura Y, Satoh N
A lasp family protein of Ciona intestinalis.Biochim Biophys Acta. 2008 ;1779(1):51-9Terasaki AG, Hiruta J, Suzuki J, Sakamoto S, Nishioka T, Suzuki H, Ohashi K, Azumi K, Ogasawara M
A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis.Development. 2004 ;131(6):1279-88Yagi K, Satou Y, Satoh N
A conserved role for the MEK signalling pathway in neural tissue specification and posteriorisation in the invertebrate chordate, the ascidian Ciona intestinalis.Development. 2003 ;130(1):147-59Hudson C, Darras S, Caillol D, Yasuo H, Lemaire P
Divergent mechanisms specify chordate motoneurons: evidence from ascidians.Development. 2011 ;138(8):1643-52Hudson C, Ba M, Rouvière C, Yasuo H
Transcriptional regulation of the retinoic acid receptor in the dorsal midline epidermis in the Ciona intestinalis embryo.Dev Growth Differ. 2009 ;51(9):777-86Koyano R, Ishida S, Fujiwara S
Expression cloning in ascidians: isolation of a novel member of the asctacin protease family.Dev Genes Evol. 2002 ;212(2):81-6Davis SW, Smith WC
Characterization of a novel vasopressin/oxytocin superfamily peptide and its receptor from an ascidian, Ciona intestinalis.Peptides. 2008 ;29(10):1672-8Kawada T, Sekiguchi T, Itoh Y, Ogasawara M, Satake H
Gene expression profiles in young adult Ciona intestinalis.Dev Genes Evol. 2002 ;212(4):173-85Ogasawara M, Sasaki A, Metoki H, Shin-i T, Kohara Y, Satoh N, Satou Y
Urochordate betagamma-crystallin and the evolutionary origin of the vertebrate eye lens.Curr Biol. 2005 ;15(18):1684-9Shimeld SM, Purkiss AG, Dirks RP, Bateman OA, Slingsby C, Lubsen NH
Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks.Development. 2004 ;131(16):4047-58Imai KS, Hino K, Yagi K, Satoh N, Satou Y
Identification of genes downstream of nodal in the Ciona intestinalis embryo.Zoolog Sci. 2010 ;27(2):69-75Mita K, Koyanagi R, Azumi K, Sabau SV, Fujiwara S
Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos.Zoolog Sci. 2010 ;27(2):110-8Takahashi H, Hotta K, Takagi C, Ueno N, Satoh N, Shoguchi E
Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5.Dev Biol. 2009 ;329(2):364-73Auger H, Lamy C, Haeussler M, Khoueiry P, Lemaire P, Joly JS
Functional architecture and evolution of transcriptional elements that drive gene coexpression.Science. 2007 ;317(5844):1557-60Brown CD, Johnson DS, Sidow A
Origin of the vertebrate visual cycle: genes encoding retinal photoisomerase and two putative visual cycle proteins are expressed in whole brain of a primitive chordate.J Comp Neurol. 2003 ;460(2):180-90Nakashima Y, Kusakabe T, Kusakabe R, Terakita A, Shichida Y, Tsuda M
A cis-regulatory signature for chordate anterior neuroectodermal genes.PLoS Genet. 2010 ;6(4):e1000912Haeussler M, Jaszczyszyn Y, Christiaen L, Joly JS
Ci-Rga, a gene encoding an MtN3/saliva family transmembrane protein, is essential for tissue differentiation during embryogenesis of the ascidian Ciona intestinalis.Differentiation. 2005 ;73(7):364-76Hamada M, Wada S, Kobayashi K, Satoh N
Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis.Dev Biol. 2008 ;317(2):649-59Irvine SQ, Fonseca VC, Zompa MA, Antony R
Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5.Dev Biol. 2009 ;():Auger H, Lamy C, Haeussler M, Khoueiry P, Lemaire P, Joly JS
Novel genes involved in Ciona intestinalis embryogenesis: Characterization of gene knockdown embryos.Dev Dyn. 2007 ;236(7):1820-31Hamada M, Wada S, Kobayashi K, Satoh N
Central nervous system-specific expression of G protein alpha subunits in the ascidian Ciona intestinalis.Zoolog Sci. 2002 ;19(10):1079-88Yoshida R, Kusakabe T, Kamatani M, Daitoh M, Tsuda M
The transcription/migration interface in heart precursors of Ciona intestinalis.Science. 2008 ;320(5881):1349-52Christiaen L, Davidson B, Kawashima T, Powell W, Nolla H, Vranizan K, Levine M
Lineage-specific regulation of the Ciona snail gene in the embryonic mesoderm and neuroectoderm.Dev Biol. 1998 ;194(2):213-25Erives A, Corbo JC, Levine M
Gene expression profiles in tadpole larvae of Ciona intestinalis.Dev Biol. 2002 ;242(2):188-203Kusakabe T, Yoshida R, Kawakami I, Kusakabe R, Mochizuki Y, Yamada L, Shin-i T, Kohara Y, Satoh N, Tsuda M, Satou Y
Ammonium channel expression is essential for brain development and function in the larva of Ciona intestinalis.J Comp Neurol. 2007 ;503(1):135-47Marino R, Melillo D, Di Filippo M, Yamada A, Pinto MR, De Santis R, Brown ER, Matassi G
Genome-wide identification of tissue-specific enhancers in the Ciona tadpole.Proc Natl Acad Sci U S A. 2002 ;99(10):6802-5Harafuji N, Keys DN, Levine M
Identification of thirty-four transcripts expressed specifically in hemocytes of Ciona intestinalis and their expression profiles throughout the life cycle.DNA Res. 2006 ;13(1):25-35Ogasawara M, Nakazawa N, Azumi K, Yamabe E, Satoh N, Satake M
Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development.Development. 2001 ;128(13):2555-67Makabe KW, Kawashima T, Kawashima S, Minokawa T, Adachi A, Kawamura H, Ishikawa H, Yasuda R, Yamamoto H, Kondoh K, Arioka S, Sasakura Y, Kobayashi A, Yagi K, Shojima K, Kondoh Y, Kido S, Tsujinami M, Nishimura N, Takahashi M, Nakamura T, Kanehisa M, Ogasawara M, Nishikata T, Nishida H
Developmental expression of ascidian neurotransmitter synthesis genes. I. Choline acetyltransferase and acetylcholine transporter genes.Dev Genes Evol. 2002 ;212(1):50-3Takamura K, Egawa T, Ohnishi S, Okada T, Fukuoka T
Identification of chondroitin/dermatan sulfotransferases in the protochordate, Ciona intestinalis.Comp Biochem Physiol B Biochem Mol Biol. 2010 ;():Tetsukawa A, Nakamura J, Fujiwara S
T-box genes in the ascidian Ciona intestinalis: characterization of cDNAs and spatial expression.Dev Dyn. 2004 ;230(4):743-53Takatori N, Hotta K, Mochizuki Y, Satoh G, Mitani Y, Satoh N, Satou Y, Takahashi H
A comprehensive survey of cadherin superfamily gene expression patterns in Ciona intestinalis.Gene Expr Patterns. 2008 ;8(5):349-56Noda T, Satoh N
Ciona intestinalis nuclear receptor 1: a member of steroid/thyroid hormone receptor family.Proc Natl Acad Sci U S A. 1998 ;95(19):11152-7Carosa E, Fanelli A, Ulisse S, Di Lauro R, Rall JE, Jannini EA
Ephrin signaling establishes asymmetric cell fates in an endomesoderm lineage of the Ciona embryo.Development. 2008 ;135(5):931-40Shi W, Levine M
Expression of Raldh2, Cyp26 and Hox-1 in normal and retinoic acid-treated Ciona intestinalis embryos.Gene Expr Patterns. 2003 ;3(3):273-7Nagatomo K, Fujiwara S
Comparative genomics identifies a cis-regulatory module that activates transcription in specific subsets of neurons in Ciona intestinalis larvae.Dev Growth Differ. 2007 ;49(8):657-67Yoshida R, Horie T, Tsuda M, Kusakabe TG
Retinoic acid affects gene expression and morphogenesis without upregulating the retinoic acid receptor in the ascidian Ciona intestinalis.Mech Dev. 2003 ;120(3):363-72Nagatomo K, Ishibashi T, Satou Y, Satoh N, Fujiwara S
Non-overlapping expression patterns of the clustered Dll-A/B genes in the ascidian Ciona Intestinalis.J Exp Zoolog B Mol Dev Evol. 2007 ;():Irvine SQ, Cangiano MC, Millette BJ, Gutter ES
Regulatory elements controlling Ci-msxb tissue-specific expression during Ciona intestinalis embryonic development.Dev Biol. 2004 ;267(2):517-28Russo MT, Donizetti A, Locascio A, D_Aniello S, Amoroso A, Aniello F, Fucci L, Branno M
Molecular evidence from Ciona intestinalis for the evolutionary origin of vertebrate sensory placodes.Dev Biol. 2005 ;282(2):494-508Mazet F, Hutt JA, Milloz J, Millard J, Graham A, Shimeld SM
Regulatory blueprint for a chordate embryo.Science. 2006 ;312(5777):1183-7Imai KS, Levine M, Satoh N, Satou Y
Ci-POU-IV expression identifies PNS neurons in embryos and larvae of the ascidian Ciona intestinalis.Dev Genes Evol. 2005 ;215(1):41-5Candiani S, Pennati R, Oliveri D, Locascio A, Branno M, Castagnola P, Pestarino M, De Bernardi F
Patterning the ascidian nervous system: structure, expression and transgenic analysis of the CiHox3 gene.Development. 1999 ;126(21):4737-48Locascio A, Aniello F, Amoroso A, Manzanares M, Krumlauf R, Branno M
Identification of neuron-specific promoters in Ciona intestinalis.Genesis. 2004 ;39(2):130-40Yoshida R, Sakurai D, Horie T, Kawakami I, Tsuda M, Kusakabe T
Structure and developmental expression of the ascidian TRP gene: insights into the evolution of pigment cell-specific gene expression.Dev Dyn. 1999 ;215(3):225-37Sato S, Toyoda R, Katsuyama Y, Saiga H, Numakunai T, Ikeo K, Gojobori T, Yajima I, Yamamoto H
Novel G-protein-coupled receptor gene expressed specifically in the entire neural tube of the ascidian Ciona intestinalis.Dev Genes Evol. 2002 ;212(9):447-51Etani K, Nishikata T
Left-right asymmetric expression of Pitx is regulated by the asymmetric Nodal signaling through an intronic enhancer in Ciona intestinalis.Dev Genes Evol. 2008 ;218(7):353-60Yoshida K, Saiga H
Isolation and characterization of endostyle-specific genes in the ascidian Ciona intestinalis.Biol Bull. 1998 ;195(1):60-9Ogasawara M, Satoh N
DBTGR: a database of tunicate promoters and their regulatory elements.Nucleic Acids Res. 2005 ;34(Database issue):D552-5Sierro N, Kusakabe T, Park KJ, Yamashita R, Kinoshita K, Nakai K
Ci-opsin1, a vertebrate-type opsin gene, expressed in the larval ocellus of the ascidian Ciona intestinalis.FEBS Lett. 2001 ;506(1):69-72Kusakabe T, Kusakabe R, Kawakami I, Satou Y, Satoh N, Tsuda M
The evolutionary origin of animal cellulose synthase.Dev Genes Evol. 2004 ;214(2):81-8Nakashima K, Yamada L, Satou Y, Azuma J, Satoh N
Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system.Development. 2009 ;136(2):285-93Imai KS, Stolfi A, Levine M, Satou Y
Regulatory gene expressions in the ascidian ventral sensory vesicle: evolutionary relationships with the vertebrate hypothalamus.Dev Biol. 2004 ;277(2):567-79Moret F, Christiaen L, Deyts C, Blin M, Vernier P, Joly JS
Restricted expression of NADPH oxidase/peroxidase gene (Duox) in zone VII of the ascidian endostyle.Cell Tissue Res. 2006 ;326(3):835-41Hiruta J, Mazet F, Ogasawara M
Ci-FoxA-a is the earliest zygotic determinant of the ascidian anterior ectoderm and directly activates Ci-sFRP1/5.Development. 2006 ;133(15):2835-44Lamy C, Rothbächer U, Caillol D, Lemaire P
Non-homologous structured CRMs from the Ciona genome.J Comput Biol. 2009 ;16(2):369-77Erives A
Patterning across the ascidian neural plate by lateral Nodal signalling sources.Development. 2005 ;132(6):1199-210Hudson C, Yasuo H
Induction of anterior neural fates in the ascidian Ciona intestinalis.Mech Dev. 2001 ;100(2):189-203Hudson C, Lemaire P
Formation of the ascidian epidermal sensory neurons: insights into the origin of the chordate peripheral nervous system.PLoS Biol. 2006 ;4(7):e225Pasini A, Amiel A, Rothbächer U, Roure A, Lemaire P, Darras S
Gene expression profiles in Ciona intestinalis tailbud embryos.Development. 2001 ;128(15):2893-904Satou Y, Takatori N, Yamada L, Mochizuki Y, Hamaguchi M, Ishikawa H, Chiba S, Imai K, Kano S, Murakami SD, Nakayama A, Nishino A, Sasakura Y, Satoh G, Shimotori T, Shin-I T, Shoguchi E, Suzuki MM, Takada N, Utsumi N, Yoshida N, Saiga H, Kohara Y, Satoh N
Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system.Development. 2008 ;136(2):285-93Imai KS, Stolfi A, Levine M, Satou Y
Ci-GATAa, a GATA-class gene from the ascidian Ciona intestinalis: isolation and developmental expression.Dev Dyn. 2002 ;226(1):145-8D_Ambrosio P, Fanelli A, Pischetola M, Spagnuolo A
Isolation and characterization of the cDNA for a Ciona intestinalis RNA binding protein: spatial and temporal expression during development.Differentiation. 2001 ;66(1):23-30Piscopo A, Branno M, Aniello F, Corrado M, Piscopo M, Fucci L
Dynamic redistribution of vasa homolog and exclusion of somatic cell determinants during germ cell specification in Ciona intestinalis.Development. 2006 ;133(14):2683-93Shirae-Kurabayashi M, Nishikata T, Takamura K, Tanaka KJ, Nakamoto C, Nakamura A
The transcript coding for an RNA-binding protein is localized in the anterior side of the ascidian 2-cell stage embryo.Dev Genes Evol. 2001 ;210(8-9):464-6Tanaka KJ, Kawamura H, Nishikata T
A new transglutaminase-like from the ascidian Ciona intestinalis.FEBS Lett. 1997 ;408(2):171-6Cariello L, Ristoratore F, Zanetti L
Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis.Mech Dev. 2001 ;99(1-2):173-6Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R, Branno M
Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona.Dev Biol. 2004 ;276(2):563-80Kusakabe T, Yoshida R, Ikeda Y, Tsuda M
Embryonic expression profiles and conserved localization mechanisms of pem/postplasmic mRNAs of two species of ascidian, Ciona intestinalis and Ciona savignyi.Dev Biol. 2006 ;296(2):524-36Yamada L
Pitx genes in Tunicates provide new molecular insight into the evolutionary origin of pituitary.Gene. 2002 ;287(1-2):107-13Christiaen L, Burighel P, Smith WC, Vernier P, Bourrat F, Joly JS
Regulation of Ci-tropomyosin-like, a Brachyury target gene in the ascidian, Ciona intestinalis.Development. 2000 ;126(24):5599-609Di Gregorio A, Levine M
Developmental expression and transcriptional regulation of Ci-Pans, a novel neural marker gene of the ascidian, Ciona intestinalis.Gene. 2007 ;():Alfano C, Teresa Russo M, Spagnuolo A
Ci-Tbx6b and Ci-Tbx6c are key mediators of the maternal effect gene Ci-macho1 in muscle cell differentiation in Ciona intestinalis embryos.Dev Biol. 2005 ;282(2):535-49Yagi K, Takatori N, Satou Y, Satoh N
Natural variation of model mutant phenotypes in Ciona intestinalis.PLoS ONE. 2008 ;3(6):e2344Sordino P, Andreakis N, Brown ER, Leccia NI, Squarzoni P, Tarallo R, Alfano C, Caputi L, D'Ambrosio P, Daniele P, D'Aniello E, D'Aniello S, Maiella S, Miraglia V, Russo MT, Sorrenti G, Branno M, Cariello L, Cirino P, Locascio A, Spagnuolo A, Zanetti L, Ristoratore F
Repression of Rx gene on the left side of the sensory vesicle by Nodal signaling is crucial for right-sided formation of the ocellus photoreceptor in the development of Ciona intestinalis.Dev Biol. 2011 ;354(1):144-50Yoshida K, Saiga H
A signalling relay involving Nodal and Delta ligands acts during secondary notochord induction in Ciona embryos.Development. 2006 ;133(15):2855-64Hudson C, Yasuo H
macho-1-Related genes in Ciona embryos.Dev Genes Evol. 2002 ;212(2):87-92Satou Y, Yagi K, Imai KS, Yamada L, Nishida H, Satoh N
M-Ras evolved independently of R-Ras and its neural function is conserved between mammalian and ascidian, which lacks classical Ras.Gene. 2008 ;429(1-2):49-58Keduka E, Kaiho A, Hamada M, Watanabe-Takano H, Takano K, Ogasawara M, Satou Y, Satoh N, Endo T
The regulation of forkhead/HNF-3beta expression in the Ciona embryo.Dev Biol. 2001 ;229(1):31-43Di Gregorio A, Corbo JC, Levine M
Promoter activity of the retinoic acid receptor gene in the Ciona intestinalis embryo.Dev Dyn. 2005 ;232(4):1124-30Fujiwara S
The dopamine-synthesizing cells in the swimming larva of the tunicate Ciona intestinalis are located only in the hypothalamus-related domain of the sensory vesicle.Eur J Neurosci. 2005 ;21(11):3043-55Moret F, Christiaen L, Deyts C, Blin M, Joly JS, Vernier P
Microarray analysis of embryonic retinoic acid target genes in the ascidian Ciona intestinalis.Dev Growth Differ. 2003 ;45(3):249-59Ishibashi T, Nakazawa M, Ono H, Satoh N, Gojobori T, Fujiwara S
Specific cellular localization of tyrosinase mRNA during Ciona intestinalis larval development.Dev Growth Differ. 1998 ;39(4):437-44Caracciolo A, Gesualdo I, Branno M, Aniello F, Di Lauro R, Palumbo A
Muscle development in Ciona intestinalis requires the b-HLH myogenic regulatory factor gene Ci-MRF.Dev Biol. 2007 ;302(1):333-44Meedel TH, Chang P, Yasuo H
Pax gene expression in the developing central nervous system of Ciona intestinalis.Gene Expr Patterns. 2003 ;3(6):743-5Mazet F, Hutt JA, Millard J, Shimeld SM
Three distinct lineages of mesenchymal cells in Ciona intestinalis embryos demonstrated by specific gene expression.Dev Biol. 2004 ;274(1):211-24Tokuoka M, Imai KS, Satou Y, Satoh N
Cihox5, a new Ciona intestinalis Hox-related gene, is involved in regionalization of the spinal cord.Dev Genes Evol. 1998 ;207(8):515-23Gionti M, Ristoratore F, Di Gregorio A, Aniello F, Branno M, Di Lauro R
Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: insights into the ancestry and evolution of the neural crest.Dev Biol. 2008 ;324(1):152-60Jeffery WR, Chiba T, Krajka FR, Deyts C, Satoh N, Joly JS
Muscle development and lineage-specific expression of CiMDF, the MyoD-family gene of Ciona intestinalis.Dev Biol. 2002 ;241(2):238-46Meedel TH, Lee JJ, Whittaker JR
The evolutionary origins of vertebrate midbrain and MHB: insights from mouse, amphioxus and ascidian Dmbx homeobox genes.Brain Res Bull. 2005 ;66(4-6):510-7Takahashi T
FGF8/17/18 functions together with FGF9/16/20 during formation of the notochord in Ciona embryos.Dev Biol. 2007 ;302(1):92-103Yasuo H, Hudson C
Mechanism of DNA replication-dependent transcriptional activation of the acetylcholinesterase gene in the Ciona intestinalis embryo.Dev Growth Differ. 2009 ;51(9):841-50Kataoka Y, Mishina R, Fujiwara S
Formation of the ascidian epidermal sensory neurons: insights into the origin of the chordate peripheral nervous system.PLoS Biol. 2006 ;4(7):e225Pasini A, Amiel A, Rothbächer U, Roure A, Lemaire P, Darras S
An ascidian RING finger gene is specifically expressed in a single cell of larval ocellus.Gene. 2003 ;312():111-6Sun X, Okuyama M, Miyazaki K, Zhang S, Wada H
Comparative expression analysis of transcription factor genes in the endostyle of invertebrate chordates.Dev Dyn. 2005 ;233(3):1031-7Hiruta J, Mazet F, Yasui K, Zhang P, Ogasawara M
Neural map of the larval central nervous system in the ascidian Ciona intestinalis.Zoolog Sci. 2010 ;27(2):191-203Takamura K, Minamida N, Okabe S
Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors.Cell. 2003 ;115(5):615-27Bertrand V, Hudson C, Caillol D, Popovici C, Lemaire P
HrWnt-5: a maternally expressed ascidian Wnt gene with posterior localization in early embryos.Int J Dev Biol. 1998 ;42(4):573-9Sasakura Y, Ogasawara M, Makabe KW
A conserved role for the MEK signalling pathway in neural tissue specification and posteriorisation in the invertebrate chordate, the ascidian Ciona intestinalis.Development. 2002 ;130(1):147-59Hudson C, Darras S, Caillol D, Yasuo H, Lemaire P
Epidermal expression of Hox1 is directly activated by retinoic acid in the Ciona intestinalis embryo.Dev Biol. 2009 ;335(2):454-63Kanda M, Wada H, Fujiwara S
Differential regional expression of genes in the developing brain of Ciona intestinalis embryos.Zoolog Sci. 2010 ;27(2):103-9Shimozono N, Ohta N, Satoh N, Hamada M
Regulation of NF-kappaB/Rel by IkappaB is essential for ascidian notochord formation.Dev Biol. 2004 ;277(1):80-91Kawai N, Takahashi H, Nishida H, Yokosawa H
Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module.Dev Biol. 2011 ;353(2):432-9Irvine SQ, Vierra DA, Millette BJ, Blanchette MD, Holbert RE
Novel genes involved in canonical Wnt/beta-catenin signaling pathway in early Ciona intestinalis embryos.Dev Growth Differ. 2008 ;50(4):215-27Wada S, Hamada M, Kobayashi K, Satoh N
Upstream regulatory sequences required for specific gene expression in the ascidian neural tube.Zoolog Sci. 2010 ;27(2):76-83Shimai K, Kitaura Y, Tamari Y, Nishikata T
Profiles of maternally expressed genes in fertilized eggs of Ciona intestinalis.Dev Biol. 2002 ;238(2):315-31Nishikata T, Yamada L, Mochizuki Y, Satou Y, Shin-i T, Kohara Y, Satoh N
Nodal regulates neural tube formation in the Ciona intestinalis embryo.Dev Genes Evol. 2007 ;217(8):593-601Mita K, Fujiwara S
Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva.J Comp Neurol. 2008 ;509(1):88-102Horie T, Sakurai D, Ohtsuki H, Terakita A, Shichida Y, Usukura J, Kusakabe T, Tsuda M
Ci-IPF1, the pancreatic homeodomain transcription factor, is expressed in neural cells of Ciona intestinalis larva.Mech Dev. 2001 ;102(1-2):271-4Corrado M, Aniello F, Fucci L, Branno M
Regulatory elements controlling Ci-msxb tissue-specific expression during Ciona intestinalis embryonic development.Dev Biol. 2004 ;267(2):517-28Russo MT, Donizetti A, Locascio A, D'Aniello S, Amoroso A, Aniello F, Fucci L, Branno M
BMP signaling coordinates gene expression and cell migration during precardiac mesoderm development.Dev Biol. 2010 ;340(2):179-87Christiaen L, Stolfi A, Levine M
Expression of hedgehog genes in Ciona intestinalis embryos.Mech Dev. 2002 ;116(1-2):235-8Takatori N, Satou Y, Satoh N
A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm.Development. 2007 ;134(22):4023-32Rothbächer U, Bertrand V, Lamy C, Lemaire P
Spatial and temporal expression of two transcriptional isoforms of Lhx3, a LIM class homeobox gene, during embryogenesis of two phylogenetically remote ascidians, Halocynthia roretzi and Ciona intestinalis.Gene Expr Patterns. 2010 ;10(2-3):98-104Kobayashi M, Takatori N, Nakajima Y, Kumano G, Nishida H, Saiga H
Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development.Proc Natl Acad Sci U S A. 2004 ;101(42):15118-23Ikuta T, Yoshida N, Satoh N, Saiga H
FoxF is essential for FGF-induced migration of heart progenitor cells in the ascidian Ciona intestinalis.Development. 2007 ;134(18):3297-305Beh J, Shi W, Levine M, Davidson B, Christiaen L
Developmental expression of tryptophan hydroxylase gene in Ciona intestinalis.Dev Genes Evol. 2007 ;217(4):307-13Pennati R, Candiani S, Biggiogero M, Zega G, Groppelli S, Oliveri D, Parodi M, De Bernardi F, Pestarino M
Lineage-independent mosaic expression and regulation of the Ciona multidom gene in the ancestral notochord.Dev Dyn. 2007 ;236(7):1806-19Oda-Ishii I, Di Gregorio A
Distinctive expression patterns of Hedgehog pathway genes in the Ciona intestinalis larva: implications for a role of Hedgehog signaling in postembryonic development and chordate evolution.Zoolog Sci. 2010 ;27(2):84-90Islam AF, Moly PK, Miyamoto Y, Kusakabe TG
Limited functions of Hox genes in the larval development of the ascidian Ciona intestinalis.Development. 2010 ;137(9):1505-13Ikuta T, Satoh N, Saiga H
Sequential and combinatorial inputs from Nodal, Delta2/Notch and FGF/MEK/ERK signalling pathways establish a grid-like organisation of distinct cell identities in the ascidian neural plate.Development. 2007 ;134(19):3527-37Hudson C, Lotito S, Yasuo H
Characterization of Brachyury-downstream notochord genes in the Ciona intestinalis embryo.Dev Biol. 2000 ;224(1):69-80Hotta K, Takahashi H, Asakura T, Saitoh B, Takatori N, Satou Y, Satoh N
Analysis of ascidian Not genes highlights their evolutionarily conserved and derived features of structure and expression in development.Dev Genes Evol. 2004 ;214(9):460-5Utsumi N, Shimojima Y, Saiga H
Identification of downstream genes of the ascidian muscle determinant gene Ci-macho1.Dev Biol. 2004 ;274(2):478-89Yagi K, Satoh N, Satou Y
Expression and functional analysis of Cititf1, an ascidian NK-2 class gene, suggest its role in endoderm development.Development. 1999 ;126(22):5149-59Ristoratore F, Spagnuolo A, Aniello F, Branno M, Fabbrini F, Di Lauro R
Brachyury downstream notochord differentiation in the ascidian embryo.Genes Dev. 1999 ;13(12):1519-23Takahashi H, Hotta K, Erives A, Di Gregorio A, Zeller RW, Levine M, Satoh N
A single GATA factor plays discrete, lineage specific roles in ascidian heart development.Dev Biol. 2011 ;352(1):154-63Ragkousi K, Beh J, Sweeney S, Starobinska E, Davidson B
Evolutionary origins of the vertebrate heart: Specification of the cardiac lineage in Ciona intestinalis.Proc Natl Acad Sci U S A. 2003 ;100(20):11469-73Davidson B, Levine M
Gene expression profiles in Ciona intestinalis cleavage-stage embryos.Mech Dev. 2002 ;112(1-2):115-27Fujiwara S, Maeda Y, Shin-I T, Kohara Y, Takatori N, Satou Y, Satoh N
Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: Insights into the ancestry and evolution of the neural crest.Dev Biol. 2008 ;324(1):152-60Jeffery WR, Chiba T, Krajka FR, Deyts C, Satoh N, Joly JS
Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis.Development. 1997 ;124(3):589-602Corbo JC, Levine M, Zeller RW
Dorsoventral patterning of the vertebrate neural tube is conserved in a protochordate.Development. 1997 ;124(12):2335-44Corbo JC, Erives A, Di Gregorio A, Chang A, Levine M


18 articles are being entered and will be available soon.

TitleJournalAuthorsAniseed dataPubmed
Evolutionary conservation of vertebrate notochord genes in the ascidian Ciona intestinalis.Genesis. 2008 ;46(11):697-710Kugler JE, Passamaneck YJ, Feldman TG, Beh J, Regnier TW, Di Gregorio AAvailable soon
Localization of CiCBR in the invertebrate chordate Ciona intestinalis: evidence of an ancient role for cannabinoid receptors as axonal regulators of neuronal signalling.J Comp Neurol. 2007 ;502(4):660-72Egertová M, Elphick MRAvailable soon
Vitamin K-dependent proteins in Ciona intestinalis, a basal chordate lacking a blood coagulation cascade.Proc Natl Acad Sci U S A. 2006 ;103(43):15794-9Kulman JD, Harris JE, Nakazawa N, Ogasawara M, Satake M, Davie EWAvailable soon
A conserved role for FGF signaling in chordate otic/atrial placode formation.Dev Biol. 2007 ;312(1):245-57Kourakis MJ, Smith WCAvailable soon
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Region specific gene expressions in the central nervous system of the ascidian embryo.Gene Expr Patterns. 2003 ;2(3-4):319-21Imai KS, Satoh N, Satou YAvailable soon
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Direct activation of a notochord cis-regulatory module by Brachyury and FoxA in the ascidian Ciona intestinalis.Development. 2009 ;136(21):3679-89Passamaneck YJ, Katikala L, Perrone L, Dunn MP, Oda-Ishii I, Di Gregorio AAvailable soon
Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis.J Cell Sci. 2010 ;123(Pt 14):2453-63Kugler JE, Gazdoiu S, Oda-Ishii I, Passamaneck YJ, Erives AJ, Di Gregorio AAvailable soon
Primordial germ cells originate from the endodermal strand cells in the ascidian Ciona intestinalis.Dev Genes Evol. 2002 ;212(1):11-8Takamura K, Fujimura M, Yamaguchi YAvailable soon
Enhanced expression of a cloned and sequenced Ciona intestinalis TNFalpha-like (CiTNFalpha) gene during the LPS-induced inflammatory response.Cell Tissue Res. 2008 ;334(2):305-17Parrinello N, Vizzini A, Arizza V, Salerno G, Parrinello D, Cammarata M, Giaramita FT, Vazzana MAvailable soon
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Morphological and gene expression similarities suggest that the ascidian neural gland may be osmoregulatory and homologous to vertebrate peri-ventricular organs.Eur J Neurosci. 2006 ;24(8):2299-308Deyts C, Casane D, Vernier P, Bourrat F, Joly JSAvailable soon
Evolutionary conservation of vertebrate notochord genes in the ascidian Ciona intestinalis.Genesis. 2008 ;():Kugler JE, Passamaneck YJ, Feldman TG, Beh J, Regnier TW, Di Gregorio AAvailable soon
Developmental expression and transcriptional regulation of Ci-Pans, a novel neural marker gene of the ascidian, Ciona intestinalis.Gene. 2007 ;406(1-2):36-41Alfano C, Teresa Russo M, Spagnuolo AAvailable soon
Developmental expression of glutamic acid decarboxylase and of gamma-aminobutyric acid type B receptors in the ascidian Ciona intestinalis.J Comp Neurol. 2007 ;506(3):489-505Zega G, Biggiogero M, Groppelli S, Candiani S, Oliveri D, Parodi M, Pestarino M, De Bernardi F, Pennati RAvailable soon
Regulatory roles of nitric oxide during larval development and metamorphosis in Ciona intestinalis.Dev Biol. 2007 ;306(2):772-84Comes S, Locascio A, Silvestre F, d'Ischia M, Russo GL, Tosti E, Branno M, Palumbo AAvailable soon


   
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