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Articles (373 results)
Title Journal Author(s) Aniseed Data PMID/DOI
Identification of a rudimentary neural crest in a non-vertebrate chordate. Nature 2012; 492; 7427:104-7 Abitua P, Wagner E, Navarrete I, Levine M
The pre-vertebrate origins of neurogenic placodes. Nature 2015; 524; 7566:462-5 Abitua P, Gainous T, Kaczmarczyk A, Winchell C, Hudson C, Kamata K, Nakagawa M, Tsuda M, Kusakabe T, Levine M
Developmental expression and transcriptional regulation of Ci-Pans, a novel neural marker gene of the ascidian, Ciona intestinalis. Gene 2007; 406; 1-2:36-41 Alfano C, Teresa Russo M, Spagnuolo A
Identification and developmental expression of Ci-msxb: a novel homologue of Drosophila msh gene in Ciona intestinalis. Mech. Dev. 1999; 88; 1:123-6 Aniello F, Locascio A, Villani M, Di Gregorio A, Fucci L, Branno M
Transcriptional regulation of ZicL in the Ciona intestinalis embryo. Dev. Genes Evol. 2006; 216; 10:597-605 Anno C, Satou A, Fujiwara S
Regeneration of oral siphon pigment organs in the ascidian Ciona intestinalis. Dev. Biol. 2010; 339; 2:374-89 Auger H, Sasakura Y, Joly J, Jeffery W
Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5. Dev. Biol. 2009; 329; 2:364-73 Auger H, Lamy C, Haeussler M, Khoueiry P, Lemaire P, Joly J
An enhancer trap in the ascidian Ciona intestinalis identifies enhancers of its Musashi orthologous gene. Dev. Biol. 2004; 275; 2:459-72 Awazu S, Sasaki A, Matsuoka T, Satoh N, Sasakura Y
High-throughput enhancer trap by remobilization of transposon Minos in Ciona intestinalis. Genesis 2007; 45; 5:307-17 Awazu S, Matsuoka T, Inaba K, Satoh N, Sasakura Y
FoxF is essential for FGF-induced migration of heart progenitor cells in the ascidian Ciona intestinalis. Development 2007; 134; 18:3297-305 Beh J, Shi W, Levine M, Davidson B, Christiaen L
The development and growth of Ciona. J. Mar. Biolog. Assoc. U.K. 1947; 26; 4:616-25 BERRILL N
Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors. Cell 2003; 115; 5:615-27 Bertrand V, Hudson C, Caillol D, Popovici C, Lemaire P
De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution. Sci Rep 2018; 8; 1:5518 Blanchoud S, Rutherford K, Zondag L, Gemmell N, Wilson M
Intraspecies sequence comparisons for annotating genomes. Genome Res. 2004; 14; 12:2406-11 Boffelli D, Weer C, Weng L, Lewis K, Shoukry M, Pachter L, Keys D, Rubin E
Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 2007; 317; 5844:1557-60 Brown C, Johnson D, Sidow A
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucleic Acids Res. 2018; 46; D1:D718-D725 Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta K, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha S, Fagotto M, Guéroult-Bellone M, Haeussler M, Jacox E, Lowe E, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown C, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff J, Lemaire P
Fine structure of the intestinal epithelium of the colonial ascidian Botryllus schlosseri. Cell Tissue Res. 1977; 182; 3:357-69 Burighel P, Milanesi C
Ci-POU-IV expression identifies PNS neurons in embryos and larvae of the ascidian Ciona intestinalis. Dev. Genes Evol. 2005; 215; 1:41-5 Candiani S, Pennati R, Oliveri D, Locascio A, Branno M, Castagnola P, Pestarino M, De Bernardi F
Identification and developmental expression of three Distal-less homeobox containing genes in the ascidian Ciona intestinalis. Mech. Dev. 2000; 99; 1-2:173-6 Caracciolo A, Di Gregorio A, Aniello F, Di Lauro R, Branno M
Specific cellular localization of tyrosinase mRNA during Ciona intestinalis larval development. Dev. Growth Differ. 1997; 39; 4:437-44 Caracciolo A, Gesualdo I, Branno M, Aniello F, Di Lauro R, Palumbo A
A new transglutaminase-like from the ascidian Ciona intestinalis. FEBS Lett. 1997; 408; 2:171-6 Cariello L, Ristoratore F, Zanetti L
Stochasticity and stereotypy in the Ciona notochord. Dev. Biol. 2015; 397; 2:248-56 Carlson M, Reeves W, Veeman M
Ciona intestinalis nuclear receptor 1: a member of steroid/thyroid hormone receptor family. Proc. Natl. Acad. Sci. U.S.A. 1998; 95; 19:11152-7 Carosa E, Fanelli A, Ulisse S, Di Lauro R, Rall J, Jannini E
Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity. Dev. Biol. 2014; 390; 2:261-72 Chen W, Pauls S, Bacha J, Elgar G, Loose M, Shimeld S
Brachyury null mutant-induced defects in juvenile ascidian endodermal organs. Development 2009; 136; 1:35-9 Chiba S, Jiang D, Satoh N, Smith W
Development of Ciona intestinalis juveniles (through 2nd ascidian stage). Zool. Sci. 2004; 21; 3:285-98 Chiba S, Sasaki A, Nakayama A, Takamura K, Satoh N
BMP signaling coordinates gene expression and cell migration during precardiac mesoderm development. Dev. Biol. 2010; 340; 2:179-87 Christiaen L, Stolfi A, Levine M
Pitx genes in Tunicates provide new molecular insight into the evolutionary origin of pituitary. Gene 2002; 287; 1-2:107-13 Christiaen L, Burighel P, Smith W, Vernier P, Bourrat F, Joly J
A modular cis-regulatory system controls isoform-specific pitx expression in ascidian stomodaeum. Dev. Biol. 2005; 277; 2:557-66 Christiaen L, Bourrat F, Joly J
Evolutionary modification of mouth position in deuterostomes. Semin. Cell Dev. Biol. 2007; 18; 4:502-11 Christiaen L, Jaszczyszyn Y, Kerfant M, Kano S, Thermes V, Joly J
The transcription/migration interface in heart precursors of Ciona intestinalis. Science 2008; 320; 5881:1349-52 Christiaen L, Davidson B, Kawashima T, Powell W, Nolla H, Vranizan K, Levine M
Spatio-temporal intersection of Lhx3 and Tbx6 defines the cardiac field through synergistic activation of Mesp. Dev. Biol. 2009; 328; 2:552-60 Christiaen L, Stolfi A, Davidson B, Levine M
Regulatory roles of nitric oxide during larval development and metamorphosis in Ciona intestinalis. Dev. Biol. 2007; 306; 2:772-84 Comes S, Locascio A, Silvestre F, d'Ischia M, Russo G, Tosti E, Branno M, Palumbo A
Suppressor of hairless activates brachyury expression in the Ciona embryo. Dev. Biol. 1998; 203; 2:358-68 Corbo J, Fujiwara S, Levine M, Di Gregorio A
Dorsoventral patterning of the vertebrate neural tube is conserved in a protochordate. Development 1997; 124; 12:2335-44 Corbo J, Erives A, Di Gregorio A, Chang A, Levine M
Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis. Development 1997; 124; 3:589-602 Corbo J, Levine M, Zeller R
Simple chordates exhibit a proton-independent function of acid-sensing ion channels. FASEB J. 2008; 22; 6:1914-23 Coric T, Passamaneck Y, Zhang P, Di Gregorio A, Canessa C
Ci-IPF1, the pancreatic homeodomain transcription factor, is expressed in neural cells of Ciona intestinalis larva. Mech. Dev. 2001; 102; 1-2:271-4 Corrado M, Aniello F, Fucci L, Branno M
Mitotic Membrane Turnover Coordinates Differential Induction of the Heart Progenitor Lineage. Dev. Cell 2015; 34; 5:505-19 Cota C, Davidson B
Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos. Elife 2020; 9; : Coulcher J, Roure A, Chowdhury R, Robert M, Lescat L, Bouin A, Carvajal Cadavid J, Nishida H, Darras S
Serial repetition of cilia pairs along the tail surface of an ascidian larva. J. Exp. Zool. 1994; 268; 1:9-16 Crowther R, Whittaker J
Ci-GATAa, a GATA-class gene from the ascidian Ciona intestinalis: isolation and developmental expression. Dev. Dyn. 2003; 226; 1:145-8 D'Ambrosio P, Fanelli A, Pischetola M, Spagnuolo A
Onecut is a direct neural-specific transcriptional activator of Rx in Ciona intestinalis. Dev. Biol. 2011; 355; 2:358-71 D'Aniello E, Pezzotti M, Locascio A, Branno M
The ascidian homolog of the vertebrate homeobox gene Rx is essential for ocellus development and function. Differentiation 2006; 74; 5:222-34 D'Aniello S, D'Aniello E, Locascio A, Memoli A, Corrado M, Russo M, Aniello F, Fucci L, Brown E, Branno M
FGF signaling delineates the cardiac progenitor field in the simple chordate, Ciona intestinalis. Genes Dev. 2006; 20; 19:2728-38 Davidson B, Shi W, Beh J, Christiaen L, Levine M
Ciona intestinalis as a model for cardiac development. Semin. Cell Dev. Biol. 2007; 18; 1:16-26 Davidson B
Evolutionary origins of the vertebrate heart: Specification of the cardiac lineage in Ciona intestinalis. Proc. Natl. Acad. Sci. U.S.A. 2003; 100; 20:11469-73 Davidson B, Levine M
Uncoupling heart cell specification and migration in the simple chordate Ciona intestinalis. Development 2005; 132; 21:4811-8 Davidson B, Shi W, Levine M
Expression cloning in ascidians: isolation of a novel member of the asctacin protease family. Dev. Genes Evol. 2002; 212; 2:81-6 Davis S, Smith W
Morphological and gene expression similarities suggest that the ascidian neural gland may be osmoregulatory and homologous to vertebrate peri-ventricular organs. Eur. J. Neurosci. 2006; 24; 8:2299-308 Deyts C, Casane D, Vernier P, Bourrat F, Joly J
Hemocyte migration during inflammatory-like reaction of Ciona intestinalis (Tunicata, ascidiacea). J. Invertebr. Pathol. 2000; 76; 2:105-11 Di Bella M, De Leo G
Regulation of Ci-tropomyosin-like, a Brachyury target gene in the ascidian, Ciona intestinalis. Development 1999; 126; 24:5599-609 Di Gregorio A, Levine M
Developmental regulation and tissue-specific localization of calmodulin mRNA in the protochordate Ciona intestinalis. Dev. Growth Differ. 1998; 40; 4:387-94 Di Gregorio A, Villani M, Locascio A, Ristoratore F, Aniello F, Branno M
The regulation of forkhead/HNF-3beta expression in the Ciona embryo. Dev. Biol. 2001; 229; 1:31-43 Di Gregorio A, Corbo J, Levine M
A new heart for a new head in vertebrate cardiopharyngeal evolution. Nature 2015; 520; 7548:466-73 Diogo R, Kelly R, Christiaen L, Levine M, Ziermann J, Molnar J, Noden D, Tzahor E
Parallel evolution of chordate cis-regulatory code for development. PLoS Genet. 2013; 9; 11:e1003904 Doglio L, Goode D, Pelleri M, Pauls S, Frabetti F, Shimeld S, Vavouri T, Elgar G
Localization of CiCBR in the invertebrate chordate Ciona intestinalis: evidence of an ancient role for cannabinoid receptors as axonal regulators of neuronal signalling. J. Comp. Neurol. 2007; 502; 4:660-72 Egertová M, Elphick M
Characterization of a maternal T-Box gene in Ciona intestinalis. Dev. Biol. 2000; 225; 1:169-78 Erives A, Levine M
Lineage-specific regulation of the Ciona snail gene in the embryonic mesoderm and neuroectoderm. Dev. Biol. 1998; 194; 2:213-25 Erives A, Corbo J, Levine M
Non-homologous structured CRMs from the Ciona genome. J. Comput. Biol. 2009; 16; 2:369-77 Erives A
New insights into the evolution of metazoan tyrosinase gene family. PLoS One 2012; 7; 4:e35731 Esposito R, D'Aniello S, Squarzoni P, Pezzotti M, Ristoratore F, Spagnuolo A
Patterning of brain precursors in ascidian embryos. Development 2017; 144; 2:258-264 Esposito R, Yasuo H, Sirour C, Palladino A, Spagnuolo A, Hudson C
Novel G-protein-coupled receptor gene expressed specifically in the entire neural tube of the ascidian Ciona intestinalis. Dev. Genes Evol. 2002; 212; 9:447-51 Etani K, Nishikata T
Interplay of negative and positive signals controls endoderm-specific expression of the ascidian Cititf1 gene promoter. Dev. Biol. 2003; 263; 1:12-23 Fanelli A, Lania G, Spagnuolo A, Di Lauro R
Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers. Proc. Natl. Acad. Sci. U.S.A. 2016; 113; 23:6508-13 Farley E, Olson K, Zhang W, Rokhsar D, Levine M
A Nodal/Eph signalling relay drives the transition from apical constriction to apico-basal shortening in ascidian endoderm invagination. Development 2020; 147; 15: Fiuza U, Negishi T, Rouan A, Yasuo H, Lemaire P
Characterization of an ascidian DEAD-box gene, Ci-DEAD1: specific expression in the germ cells and its mRNA localization in the posterior-most blastomeres in early embryos. Dev. Genes Evol. 2000; 210; 2:64-72 Fujimura M, Takamura K
The snail repressor establishes a muscle/notochord boundary in the Ciona embryo. Development 1998; 125; 13:2511-20 Fujiwara S, Corbo J, Levine M
Gene expression profiles in Ciona intestinalis cleavage-stage embryos. Mech. Dev. 2002; 112; 1-2:115-27 Fujiwara S, Maeda Y, Shin-I T, Kohara Y, Takatori N, Satou Y, Satoh N
Promoter activity of the retinoic acid receptor gene in the Ciona intestinalis embryo. Dev. Dyn. 2005; 232; 4:1124-30 Fujiwara S
Diverse ETS transcription factors mediate FGF signaling in the Ciona anterior neural plate. Dev. Biol. 2015; 399; 2:218-25 Gainous T, Wagner E, Levine M
TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates. BMC Evol. Biol. 2016; 16; :57 Garstang M, Osborne P, Ferrier D
Cytodifferentiation of hair cells during the development of a basal chordate. Hear. Res. 2013; 304; :188-99 Gasparini F, Caicci F, Rigon F, Zaniolo G, Burighel P, Manni L
Cihox5, a new Ciona intestinalis Hox-related gene, is involved in regionalization of the spinal cord. Dev. Genes Evol. 1998; 207; 8:515-23 Gionti M, Ristoratore F, Di Gregorio A, Aniello F, Branno M, Di Lauro R
Identification and developmental expression of Ci-isl, a homologue of vertebrate islet genes, in the ascidian Ciona intestinalis. Mech. Dev. 1998; 78; 1-2:199-202 Giuliano P, Marino R, Pinto M, De Santis R
Surrounding tissues canalize motile cardiopharyngeal progenitors towards collective polarity and directed migration. Development 2015; 142; 3:544-54 Gline S, Kaplan N, Bernadskaya Y, Abdu Y, Christiaen L
A transiently expressed connexin is essential for anterior neural plate development in Ciona intestinalis. Development 2013; 140; 1:147-55 Hackley C, Mulholland E, Kim G, Newman-Smith E, Smith W
A cis-regulatory signature for chordate anterior neuroectodermal genes. PLoS Genet. 2010; 6; 4:e1000912 Haeussler M, Jaszczyszyn Y, Christiaen L, Joly J
Evolution of the chordate regeneration blastema: Differential gene expression and conserved role of notch signaling during siphon regeneration in the ascidian Ciona. Dev. Biol. 2015; 405; 2:304-15 Hamada M, Goricki S, Byerly M, Satoh N, Jeffery W
Expression of neuropeptide- and hormone-encoding genes in the Ciona intestinalis larval brain. Dev. Biol. 2011; 352; 2:202-14 Hamada M, Shimozono N, Ohta N, Satou Y, Horie T, Kawada T, Satake H, Sasakura Y, Satoh N
Ci-Rga, a gene encoding an MtN3/saliva family transmembrane protein, is essential for tissue differentiation during embryogenesis of the ascidian Ciona intestinalis. Differentiation 2005; 73; 7:364-76 Hamada M, Wada S, Kobayashi K, Satoh N
Novel genes involved in Ciona intestinalis embryogenesis: characterization of gene knockdown embryos. Dev. Dyn. 2007; 236; 7:1820-31 Hamada M, Wada S, Kobayashi K, Satoh N
Microarray analysis of zygotic expression of transcription factor genes and cell signaling molecule genes in early Ciona intestinalis embryos. Dev. Growth Differ. 2007; 49; 1:27-37 Hamaguchi M, Fujie M, Noda T, Satoh N
Genome-wide identification of tissue-specific enhancers in the Ciona tadpole. Proc. Natl. Acad. Sci. U.S.A. 2002; 99; 10:6802-5 Harafuji N, Keys D, Levine M
Differential Expression of a Classic Cadherin Directs Tissue-Level Contractile Asymmetry during Neural Tube Closure. 2019; 51; 2:158-172.e4 Hashimoto H, Munro E
The transcription factor FoxB mediates temporal loss of cellular competence for notochord induction in ascidian embryos. Development 2011; 138; 12:2591-600 Hashimoto H, Enomoto T, Enomoto A, Kumano G, Nishida H
p120RasGAP mediates ephrin/Eph-dependent attenuation of FGF/ERK signals during cell fate specification in ascidian embryos. Development 2013; 140; 21:4347-52 Haupaix N, Stolfi A, Sirour C, Picco V, Levine M, Christiaen L, Yasuo H
AMPA glutamate receptors are required for sensory-organ formation and morphogenesis in the basal chordate. Proc Natl Acad Sci U S A 2017; 114; 15:3939-3944 Hirai S, Hotta K, Kubo Y, Nishino A, Okabe S, Okamura Y, Okado H
Developmental fates of larval tissues after metamorphosis in ascidian Halocynthia roretzi. I. Origin of mesodermal tissues of the juvenile. Dev. Biol. 1997; 192; 2:199-210 Hirano T, Nishida H
Developmental fates of larval tissues after metamorphosis in the ascidian, Halocynthia roretzi. II. Origin of endodermal tissues of the juvenile. Dev. Genes Evol. 2000; 210; 2:55-63 Hirano T, Nishida H
Comparative expression analysis of transcription factor genes in the endostyle of invertebrate chordates. Dev. Dyn. 2005; 233; 3:1031-7 Hiruta J, Mazet F, Yasui K, Zhang P, Ogasawara M
Restricted expression of NADPH oxidase/peroxidase gene (Duox) in zone VII of the ascidian endostyle. Cell Tissue Res. 2006; 326; 3:835-41 Hiruta J, Mazet F, Ogasawara M
Glutamatergic networks in the Ciona intestinalis larva. J. Comp. Neurol. 2008; 508; 2:249-63 Horie T, Kusakabe T, Tsuda M
Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva. J. Comp. Neurol. 2008; 509; 1:88-102 Horie T, Sakurai D, Ohtsuki H, Terakita A, Shichida Y, Usukura J, Kusakabe T, Tsuda M
Ependymal cells of chordate larvae are stem-like cells that form the adult nervous system. Nature 2011; 469; 7331:525-8 Horie T, Shinki R, Ogura Y, Kusakabe T, Satoh N, Sasakura Y
Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 2013; 55; 9:776-85 Horikawa Y, Matsumoto H, Yamaguchi F, Ishida S, Fujiwara S
Characterization of Brachyury-downstream notochord genes in the Ciona intestinalis embryo. Dev. Biol. 2000; 224; 1:69-80 Hotta K, Takahashi H, Asakura T, Saitoh B, Takatori N, Satou Y, Satoh N
A web-based interactive developmental table for the ascidian Ciona intestinalis, including 3D real-image embryo reconstructions: I. From fertilized egg to hatching larva. Dev. Dyn. 2007; 236; 7:1790-805 Hotta K, Mitsuhara K, Takahashi H, Inaba K, Oka K, Gojobori T, Ikeo K
Temporal expression patterns of 39 Brachyury-downstream genes associated with notochord formation in the Ciona intestinalis embryo. Dev. Growth Differ. 1999; 41; 6:657-64 Hotta K, Takahashi H, Erives A, Levine M, Satoh N
Neuronal map reveals the highly regionalized pattern of the juvenile central nervous system of the ascidian Ciona intestinalis. Dev. Dyn. 2015; 244; 11:1375-93 Hozumi A, Horie T, Sasakura Y
Enhancer activity sensitive to the orientation of the gene it regulates in the chordate genome. Dev. Biol. 2013; 375; 1:79-91 Hozumi A, Yoshida R, Horie T, Sakuma T, Yamamoto T, Sasakura Y
Germline transgenesis of the chordate Ciona intestinalis with hyperactive variants of sleeping beauty transposable element. Dev. Dyn. 2013; 242; 1:30-43 Hozumi A, Mita K, Miskey C, Mates L, Izsvak Z, Ivics Z, Satake H, Sasakura Y
Efficient transposition of a single Minos transposon copy in the genome of the ascidian Ciona intestinalis with a transgenic line expressing transposase in eggs. Dev. Dyn. 2010; 239; 4:1076-88 Hozumi A, Kawai N, Yoshida R, Ogura Y, Ohta N, Satake H, Satoh N, Sasakura Y
Divergent mechanisms specify chordate motoneurons: evidence from ascidians. Development 2011; 138; 8:1643-52 Hudson C, Ba M, Rouvière C, Yasuo H
The central nervous system of ascidian larvae. Wiley Interdiscip Rev Dev Biol 2016; 5; 5:538-61 Hudson C
A signalling relay involving Nodal and Delta ligands acts during secondary notochord induction in Ciona embryos. Development 2006; 133; 15:2855-64 Hudson C, Yasuo H
Co-expression of Foxa.a, Foxd and Fgf9/16/20 defines a transient mesendoderm regulatory state in ascidian embryos. Elife 2016; 5; : Hudson C, Sirour C, Yasuo H
β-Catenin-driven binary fate specification segregates germ layers in ascidian embryos. Curr. Biol. 2013; 23; 6:491-5 Hudson C, Kawai N, Negishi T, Yasuo H
Snail mediates medial-lateral patterning of the ascidian neural plate. Dev. Biol. 2015; 403; 2:172-9 Hudson C, Sirour C, Yasuo H
Induction of anterior neural fates in the ascidian Ciona intestinalis. Mech. Dev. 2001; 100; 2:189-203 Hudson C, Lemaire P
Sequential and combinatorial inputs from Nodal, Delta2/Notch and FGF/MEK/ERK signalling pathways establish a grid-like organisation of distinct cell identities in the ascidian neural plate. Development 2007; 134; 19:3527-37 Hudson C, Lotito S, Yasuo H
A Simple Method to Identify Ascidian Brain Lineage Cells at Neural Plate Stages Following In Situ Hybridization. Methods Mol Biol 2020; 2047; :325-345 Hudson C
A conserved role for the MEK signalling pathway in neural tissue specification and posteriorisation in the invertebrate chordate, the ascidian Ciona intestinalis. Development 2003; 130; 1:147-59 Hudson C, Darras S, Caillol D, Yasuo H, Lemaire P
Patterning across the ascidian neural plate by lateral Nodal signalling sources. Development 2005; 132; 6:1199-210 Hudson C, Yasuo H
Transposon-mediated targeted and specific knockdown of maternally expressed transcripts in the ascidian Ciona intestinalis. Sci Rep 2014; 4; :5050 Iitsuka T, Mita K, Hozumi A, Hamada M, Satoh N, Sasakura Y
A time delay gene circuit is required for palp formation in the ascidian embryo. Development 2013; 140; 23:4703-8 Ikeda T, Matsuoka T, Satou Y
Differential temporal control of Foxa.a and Zic-r.b specifies brain versus notochord fate in the ascidian embryo. Development 2017; 144; 1:38-43 Ikeda T, Satou Y
Ciona intestinalis Hox gene cluster: Its dispersed structure and residual colinear expression in development. Proc. Natl. Acad. Sci. U.S.A. 2004; 101; 42:15118-23 Ikuta T, Yoshida N, Satoh N, Saiga H
Limited functions of Hox genes in the larval development of the ascidian Ciona intestinalis. Development 2010; 137; 9:1505-13 Ikuta T, Satoh N, Saiga H
Dynamic change in the expression of developmental genes in the ascidian central nervous system: revisit to the tripartite model and the origin of the midbrain-hindbrain boundary region. Dev. Biol. 2007; 312; 2:631-43 Ikuta T, Saiga H
Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq. Sci Rep 2020; 10; 1:4961 Ilsley G, Suyama R, Noda T, Satoh N, Luscombe N
Antagonism between β-catenin and Gata.a sequentially segregates the germ layers of ascidian embryos. Development 2016; 143; 22:4167-4172 Imai K, Hudson C, Oda-Ishii I, Yasuo H, Satou Y
Region specific gene expressions in the central nervous system of the ascidian embryo. Gene Expr. Patterns 2002; 2; 3-4:319-21 Imai K, Satoh N, Satou Y
Cis-acting transcriptional repression establishes a sharp boundary in chordate embryos. Science 2012; 337; 6097:964-7 Imai K, Daido Y, Kusakabe T, Satou Y
Regulatory blueprint for a chordate embryo. Science 2006; 312; 5777:1183-7 Imai K, Levine M, Satoh N, Satou Y
An essential role of a FoxD gene in notochord induction in Ciona embryos. Development 2002; 129; 14:3441-53 Imai K, Satoh N, Satou Y
Neurons of the ascidian larval nervous system in Ciona intestinalis: II. Peripheral nervous system. J. Comp. Neurol. 2007; 501; 3:335-52 Imai J, Meinertzhagen I
Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks. Development 2004; 131; 16:4047-58 Imai K, Hino K, Yagi K, Satoh N, Satou Y
Neurons of the ascidian larval nervous system in Ciona intestinalis: I. Central nervous system. J. Comp. Neurol. 2007; 501; 3:316-34 Imai J, Meinertzhagen I
Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system. Development 2009; 136; 2:285-93 Imai K, Stolfi A, Levine M, Satou Y
Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module. Dev. Biol. 2011; 353; 2:432-9 Irvine S, Vierra D, Millette B, Blanchette M, Holbert R
Non-overlapping expression patterns of the clustered Dll-A/B genes in the ascidian Ciona intestinalis. J. Exp. Zool. B Mol. Dev. Evol. 2007; 308; 4:428-41 Irvine S, Cangiano M, Millette B, Gutter E
Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis. Dev. Biol. 2008; 317; 2:649-59 Irvine S, Fonseca V, Zompa M, Antony R
Oligonucleotide-based microarray analysis of retinoic acid target genes in the protochordate, Ciona intestinalis. Dev. Dyn. 2005; 233; 4:1571-8 Ishibashi T, Usami T, Fujie M, Azumi K, Satoh N, Fujiwara S
Microarray analysis of embryonic retinoic acid target genes in the ascidian Ciona intestinalis. Dev. Growth Differ. 2003; 45; 3:249-59 Ishibashi T, Nakazawa M, Ono H, Satoh N, Gojobori T, Fujiwara S
Distinctive expression patterns of Hedgehog pathway genes in the Ciona intestinalis larva: implications for a role of Hedgehog signaling in postembryonic development and chordate evolution. Zool. Sci. 2010; 27; 2:84-90 Islam A, Moly P, Miyamoto Y, Kusakabe T
Functional studies of the Ciona intestinalis myogenic regulatory factor reveal conserved features of chordate myogenesis. Dev Biol 2013; 376; 2:213-23 Izzi S, Colantuono B, Sullivan K, Khare P, Meedel T
Trunk lateral cells are neural crest-like cells in the ascidian Ciona intestinalis: insights into the ancestry and evolution of the neural crest. Dev. Biol. 2008; 324; 1:152-60 Jeffery W, Chiba T, Krajka F, Deyts C, Satoh N, Joly J
Tbx2/3 is an essential mediator within the Brachyury gene network during Ciona notochord development. Development 2013; 140; 11:2422-33 José-Edwards D, Oda-Ishii I, Nibu Y, Di Gregorio A
Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet. 2015; 11; 12:e1005730 José-Edwards D, Oda-Ishii I, Kugler J, Passamaneck Y, Katikala L, Nibu Y, Di Gregorio A
The identification of transcription factors expressed in the notochord of Ciona intestinalis adds new potential players to the brachyury gene regulatory network. Dev. Dyn. 2011; 240; 7:1793-805 José-Edwards D, Kerner P, Kugler J, Deng W, Jiang D, Di Gregorio A
Transcriptional regulation of the peripheral nervous system in Ciona intestinalis. Dev. Biol. 2013; 378; 2:183-93 Joyce Tang W, Chen J, Zeller R
Nonreproductive role of gonadotropin-releasing hormone in the control of ascidian metamorphosis. Dev. Dyn. 2014; 243; 12:1524-35 Kamiya C, Ohta N, Ogura Y, Yoshida K, Horie T, Kusakabe T, Satake H, Sasakura Y
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