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  1. Data

Aniseed Data

Genomic data

Assembly
Joined Scaffold (Fasta) 32.6 MB
Joined Scaffold (GFF3) 16 kB

Coding Gene Models
KH2012 complete with NCBI gene features (GFF3) 10.9 MB
KH2012 complete with NCBI Gene Model to Best Blast Hit mapping 327.7 kB

sgRNA
CionaWholeGenome_sgRNA_score_primer 159.1 MB

Transcript Models
KH2012 complete with NCBI (Nucleotides Fasta) 14.8 MB
KH2012 complete with NCBI (Proteins Fasta - from Met) 5 MB

Functional Annotations
GO annotations(GAF) 16.6 MB
GOSlim annotations(GAF) 1.4 MB
GOSlim ontology 85.2 kB
InterPro annotations 2.8 MB
UniProt Blast 1.6 MB

Genes Phylogeny
Ciona robusta Orthology Trees (v11, SiLiX)

Old Transcript Models
Ensembl [Obsolete] 10.1 MB
JGI v1.0 [Obsolete] 8.7 MB
Kyoto Grail 2005 [Obsolete] 10.8 MB
KH2012 vs Ensembl (Blast) 615.2 kB
KH2012 vs JGI (Blast) 472 kB
KH2012 vs Kyoto Grail (Blast) 501.4 kB

cDNA sequences
cDNA Sequences including ESTs (fasta) 231.1 MB
ESTs <—> Genome (Exonerate GFF3) 43.6 MB
ESTs <—> KH Transcript Models (Blast) 30.6 MB

cDNA clone collections
Ciona Gateway full ORF plate coordinates 388 kB
Ciona gene collection 1 Satoh file 90.1 kB
Ciona Gene Clones Correspondence file 446.4 kB

Libraries
Sequenced cDNA Libraries 956 bytes
Libraries <—> cDNA Clones 24.1 MB

Selex seq
SELEX-seq table S1-S3, Nitta et al. 2019 2.7 MB
SELEX-seq all rounds 6-mer enrichments and PWMs 32.5 MB
SELEX-seq best round 6-mer enrichments 4.5 MB
Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 24.1 kB

Biometry data
Biometry data for the whole embryo collection 66 kB
Contact Surface
Contact surface data 120.6 kB
Surface/Volume data 21.9 kB
Expression data

In situ data
ISH 1.8 MB

Regulatory Regions
Cis-regulatory modules 486 kB

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


cDNA sequences
ESTs (fasta) 19.6 MB

Functional annotations
GO annotations(GAF) 16.3 MB
GOSlim annotations(GAF) 2.5 MB
GOSlim ontology 85.2 kB
InterPro annotations 1.4 MB
UniProt Blast 1 MB

Genes Phylogeny
Halocynthia roretzi Orthology Trees (v11, SiLiX)

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 25.9 kB
Biometry data
Biometry data for the whole embryo collection 1.3 kB
Surface
Contact surface data 1.3 kB
Surface/Volume data 516 bytes
Expression data

In situ data
ISH 273.2 kB

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


cDNA sequences
ESTs (fasta) 37.3 MB
Functional annotations
GO annotations(GAF) 18 MB
GOSlim annotations(GAF) 2.8 MB
GOSlim ontology 85.2 kB
InterPro annotations 1.7 MB
UniProt Blast 1.3 MB

Genes Phylogeny
Phallusia mammillata Orthology Trees (v11, SiLiX)

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 26.1 kB
Biometry data
Biometry data for the whole embryo collection 12.2 kB
Surface
Contact surface data 31.7 kB
Surface/Volume data 3.5 kB
Expression data

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


Functional Annotations
GO annotations(GAF) 13.2 MB
GOSlim annotations(GAF) 2.1 MB
InterPro annotations 1.1 MB
UniProt Blast 813 kB

Genes Phylogeny
Halocynthia aurantium Orthology Trees (v11, SiLiX)

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 25.6 kB

Expression data

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


Functional Annotations
GO annotations(GAF) 11.2 MB
GOSlim annotations(GAF) 1.7 MB
InterPro annotations 853.2 kB
UniProt Blast 697.2 kB

Genes Phylogeny
Phallusia fumigata Orthology Trees (v11, SiLiX)

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 25.8 kB

Expression data