Login
Help

DOWNLOADS

Submit your Data

  1. Data

Aniseed Data

Genomic data

Assembly
Joined Scaffold (Fasta) 32.6 MB
Joined Scaffold (GFF3) 16 kB

Coding Gene Models
KH2012 gene features (GFF3) 6.5 MB
KH2012 Gene Model to Best Blast Hit mapping 126.9 kB

sgRNA
CionaWholeGenome_sgRNA_score_primer 159.1 MB

Transcript Models
KH2012 (Nucleotides Fasta) 12.2 MB
KH2012 (Proteins Fasta - from Met) 4.1 MB

Functional Annotations
GO annotations(GAF) 9 MB
GOSlim annotations(GAF) 1.4 MB
GOSlim ontology 85.2 kB
InterPro annotations 733.2 kB

Genes Phylogeny
Ciona robusta Orthology Trees (v11, SiLiX) 6.4 MB

Old Transcript Models
Ensembl [Obsolete] 10.1 MB
JGI v1.0 [Obsolete] 8.7 MB
Kyoto Grail 2005 [Obsolete] 10.8 MB
KH2012 vs Ensembl (Blast) 615.2 kB
KH2012 vs JGI (Blast) 472 kB
KH2012 vs Kyoto Grail (Blast) 501.4 kB

cDNA sequences
cDNA Sequences including ESTs (fasta) 214.7 MB
ESTs <—> Genome (Exonerate GFF3) 16.2 MB
ESTs <—> KH Transcript Models (Blast) 26 MB

cDNA clone collections
Ciona Gateway full ORF plate coordinates 388 kB
Ciona gene collection 1 Satoh file 90.1 kB
Ciona Gene Clones Correspondence file 446.4 kB

Libraries
Sequenced cDNA Libraries 956 bytes
Libraries <—> cDNA Clones 24.1 MB

Selex seq
SELEX-seq all rounds 6-mer enrichments and PWMs 32.5 MB
SELEX-seq best round 6-mer enrichments 4 MB
Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 24.1 kB

Biometry data
Biometry data for the whole embryo collection 66 kB
Contact Surface
Contact surface data 120.6 kB
Surface/Volume data 21.9 kB
Expression data

In situ data
ISH 798.4 MB

Regulatory Regions
Cis-regulatory modules 356.4 kB

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


cDNA sequences
ESTs (fasta) 17.7 MB

Functional annotations
GO annotations(GAF) 581.3 kB
GOSlim annotations(GAF) 93.6 kB
GOSlim ontology 85.2 kB
InterPro annotations 459.9 kB
UniProt Blast 1009.2 kB

Genes Phylogeny
Halocynthia roretzi Orthology Trees (v11, SiLiX) 6.3 MB

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 25.9 kB
Biometry data
Biometry data for the whole embryo collection 1.3 kB
Surface
Contact surface data 1.3 kB
Surface/Volume data 516 bytes
Expression data

In situ data
ISH 267.9 kB

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


Functional annotations
GO annotations(GAF) 9.6 MB
GOSlim annotations(GAF) 1.6 MB
GOSlim ontology 85.2 kB
InterPro annotations 562.1 kB
UniProt Blast 1.2 MB

Genes Phylogeny
Phallusia mammillata Orthology Trees (v11, SiLiX) 6.4 MB

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 26.1 kB
Biometry data
Biometry data for the whole embryo collection 12.2 kB
Surface
Contact surface data 31.7 kB
Surface/Volume data 3.5 kB
Expression data

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


Functional Annotations
InterPro annotations 369.5 kB
UniProt Blast 540.5 kB

Genes Phylogeny
Halocynthia aurantium Orthology Trees (v11, SiLiX) 5.7 MB

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 25.6 kB

Expression data

Genomic data

Assembly

Until the Phallusia and Halocynthia genomes paper is published please contact us at Aniseed Contact if you wish to carry out whole genome analysys of assembly or protein/transcript models.


Functional Annotations
InterPro annotations 311.2 kB
UniProt Blast 433.6 kB

Genes Phylogeny
Phallusia fumigata Orthology Trees (v11, SiLiX) 5.4 MB

Anatomy data

Ontologies
Anatomical territories - Developmental stages (OBO) 25.8 kB

Expression data