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  1. Publications
Aniseed & 3D Virtual Embryo publications and related to ...


ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
M. Brozovic, C. Dantec, J. Dardaillon, D. Dauga, E. Faure, M. Gineste, A. Louis, M. Naville, K. R Nitta, J. Piette, W. Reeves, C. Scornavacca, P. Simion, R. Vincentelli, M. Bellec, S. Ben Aicha, M. Fagotto, M. Guéroult-Bellone, M. Haeussler, E. Jacox, E. K Lowe, M. Mendez, A. Roberge, A. Stolfi, R. Yokomori, C. Titus Brown, C. Cambillau, L. Christiaen, F. Delsuc, E. Douzery, R. Dumollard, T. Kusakabe, K. Nakai, H. Nishida, Y. Satou, B. Swalla, M. Veeman, J. Volff, P. Lemaire.
Nucleic Acids Research, Vol. 46, Issue D1, 4 January 2018, Pages D718–D725.


ANISEED 2015: a digital framework for the comparative developmental biology of ascidians.
M. Brozovic, C. Martin, C. Dantec, D. Dauga, M. Mendez, P. Simion, M. Percher, B. Laporte, C. Scornavacca, A. Di Gregorio, S. Fujiwara, M. Gineste, E. K. Lowe, J. Piette, C. Racioppi, F. Ristoratore, Y. Sasakura, N. Takatori, T. C. Brown, F. Delsuc, E. Douzery, C. Gissi, A. McDougall, H. Nishida, H. Sawada, B. J. Swalla, H. Yasuo, P. Lemaire.
Nucleic Acids Research, Vol. 44, Issue D1, 4 January 2016, Pages D808–D818.


The ANISEED database: digital representation, formalisation and elucidation of a chordate developmental program.
O. Tassy, D. Dauga, F. Daian, D. Sobral, F. Robin, P. Khoueiry, D. Salgado, V. Fox, D. Caillol, R. Schiappa, B. Laporte, A. Rios, G. Luxardi, T. Kusakabe, J. S. Joly, S. Darras, L. Christiaen, M. Contensin, H. Auger, C. Lamy, C. Hudson, U. Rothbächer, M. J. Gilchrist, K. W. Makabe, K. Hotta, S. Fujiwara, N. Satoh, Y. Satou and P. Lemaire.
Genome Research, in Press.

From Confocal imaging to 3D Model : A protocol for creating 3D digital replica of ascidian embryos.
François Robin, Delphine Dauga, Olivier Tassy, Daniel Sobral, Fabrice Daian and Patrick Lemaire.
Imaging in Developmental Biology, 2010 January.


Highly divergent gene expression programs can lead to similar chordate larval body plans.
Daniel Sobral, Olivier Tassy and Patrick Lemaire.
Current Biology, Vol. 19, Issue 23, Pages 2014-9.


Path to a Tunicate
NETWATCH edited by Mitch Leslie
Science, Vol. 313, Page 1709.

The multidimensionality of cell behaviors underlying morphogenesis: a case study in ascidians.
Anna Di Gregorio, Anna-Katerina Hadjantonakis.
BioEssays, Vol. 28, Issue 9, Pages 874 - 879.

A quantitative approach to the study of cell shapes and interractions during early chordate embryogenesis.
Olivier Tassy, Fabrice Daian, Clare Hudson, Vincent Bertrand and Patrick Lemaire.
Current Biology, Vol. 16, Issue 4, Pages 345-358.